Cleaned up makefile, started presentation

Makefile

@@ -1,68 +1,39 @@
-OPTIONS = markdown+yaml_metadata_block+smart
-
-NOTES = $(wildcard prelim_notes/*.md)
-NOTES_PDFS = $(patsubst %.md,%.pdf,$(NOTES))
-
-THESIS = LaTeX/thesis.tex
+SRC_DIR = LaTeX/
+THESIS_SRC_NAMES = thesis.tex thesis.bib approach.tex conclusion.tex introduction.tex \
+				   results.tex trajectory_design.tex trajectory_optimization.tex
+THESIS_SRC = $(addprefix $(SRC_DIR)/,$(THESIS_SRC_NAMES))
+THESIS_PRES_SRC_NAMES = presentation.tex
+THESIS_PRES_SRC = $(addprefix $(SRC_DIR)/,$(THESIS_PRES_SRC_NAMES))
+THESIS_PRES = presentation.pdf
 THESIS_PDF = thesis.pdf
+BUILD_DIR = temp/
 
-all: $(THESIS_PDF) $(NOTES_PDFS)
+all: $(THESIS_PDF) $(THESIS_PRES)
 
-$(NOTES_PDFS): $(NOTES)
-	pandoc \
-		--variable mainfont="Roboto" \
-		--variable monofont="Fira Code" \
-		--variable fontsize=11pt \
-		--variable geometry:"top=1in, bottom=1in, left=1in, right=1in" \
-		--variable geometry:letterpaper \
-		-f markdown  $< \
-		-o $@
+$(BUILD_DIR):
+	mkdir -p $(BUILD_DIR)
 
-thesis_pdf/:
-	mkdir $@
+$(BUILD_DIR)/$(THESIS_PDF): $(BUILD_DIR) $(THESIS_SRC)
+	xelatex --output-directory $(BUILD_DIR) $(SRC_DIR)/thesis
+	bibtex $(BUILD_DIR)/thesis
+	xelatex --output-directory $(BUILD_DIR) $(SRC_DIR)/thesis
+	xelatex --output-directory $(BUILD_DIR) $(SRC_DIR)/thesis
 
-$(THESIS_PDF): $(THESIS) LaTeX/thesis.bib
-	mkdir -p temp
-	cp -r LaTeX/fig .
-	cp -r LaTeX/flowcharts .
-	cp -r LaTeX/thesis.tex .
-	cp -r LaTeX/macros.tex .
-	cp -r LaTeX/thesis.bib .
-	cp -r LaTeX/thesis.cls .
-	xelatex thesis
-	bibtex thesis
-	xelatex thesis
-	xelatex thesis
-	rm -rf fig
-	rm -rf flowcharts
-	cp thesis.pdf temp/.
-	rm -rf macros.tex
-	rm -rf thesis.*
-	cp temp/thesis.pdf .
-	rm -rf temp
+$(BUILD_DIR)/$(THESIS_PRES): $(BUILD_DIR) $(THESIS_PRES_SRC)
+	xelatex --output-directory $(BUILD_DIR) $(SRC_DIR)/presentation
+
+$(THESIS_PDF): $(BUILD_DIR)/$(THESIS_PDF)
+	cp $(BUILD_DIR)/thesis.pdf .
+
+$(THESIS_PRES): $(BUILD_DIR)/$(THESIS_PRES)
+	cp $(BUILD_DIR)/presentation.pdf .
 
 .PHONY: clean revise
 
 clean:
 	rm -rf $(THESIS_PDF)
-	rm -rf $(NOTES_PDFS)
-	rm -rf thesis_pdf
+	rm -rf $(THESIS_PRES)
+	rm -rf $(BUILD_DIR)
 
-revise: $(THESIS) LaTeX/thesis.bib
-	mkdir -p temp
-	cp -r LaTeX/fig .
-	cp -r LaTeX/flowcharts .
-	cp -r LaTeX/thesis.tex .
-	cp -r LaTeX/macros.tex .
-	cp -r LaTeX/thesis.bib .
-	cp -r LaTeX/thesis.cls .
-	xelatex thesis
-	bibtex thesis
-	xelatex thesis
-	xelatex thesis
-	rm -rf fig
-	rm -rf flowcharts
-	cp thesis.pdf temp/.
-	rm -rf macros.tex
-	rm -rf thesis.*
-	cp temp/thesis.pdf .
+final: $(THESIS_PDF) $(THESIS_PRES)
+	rm -rf $(BUILD_DIR)